Bioperl
Bioperl is set of Perl Modules for bioinformatics. It contains objects for Sequences, features on Sequences, and other important bioinformatics attributes.
| Tags | Scientific/Engineering Bioinformatics |
|---|---|
| Licenses | Artistic |
| Implementation | Perl |
Recent releases
- 26 Jan 2009 04:52
Changes: This is the first core release in the 1.6 series, and the first stable release after 5 years of development releases.
- 06 Dec 2006 23:20
Changes: Many bugfixes and enhancements were made, including support for parsing the latest NCBI BLAST text format changes, PAML 3.15 support, a Taxonomy (Bio::Species) overhaul, a Bio::Map overhaul, a Bio::SearchIO speedup, the introduction of a Build.PL installation system, and fixes for some memory leaks in Bio::Tree. This version requires Perl 5.6.1 or later.
- 13 Oct 2005 18:32
Changes: This release fixes broken code in the 1.5.0 release, deals with NCBI RemoteBlast changes, adds better BLAST parsing, and respects the 1.4.0 API.
- 29 Jan 2005 12:49
Changes: This release includes several new modules and some code cleanup since the 1.4.0 branch. It is the initial code that will lead to the 1.6 stable branch release.
- 23 Dec 2003 08:56
Changes: Over 3000 file changes have gone into this release since the 1.2 development tree was branched off from the main. Several new HOWTOs are available at http://bioperl.org/HOWTOs/. SimpleWebAnalysis, Trees, Feature Annotation, OBDA Access, and Flat Databases were added. This release is also paired with releases of bioperl-ext (C-extensions) and bioperl-run (Perl module wrappers around many common compbio applications).
