COPASI
COPASI is a software application for modeling and simulation of biochemical networks. The software package has a GUI that lets users define biochemical network models by entering chemical reactions and kinetic equations. A powerful simulation engine can then perform simulations of the dynamics of the networks and carry out many different computational analyses. COPASI can simulate dynamics using either an ODE approach or a stochastic chemical kinetics approach (Gillespie-type algorithms).
| Tags | education Scientific/Engineering Bioinformatics Chemistry |
|---|---|
| Operating Systems | Mac OS X Windows Windows Windows POSIX Linux Solaris |
| Implementation | C++ |
Recent releases
- 17 Apr 2009 12:59
Changes: This release adds many bugfixes, MIRIAM-compliant annotation, time scale separation analysis, display of results in reaction network diagrams, 3D bar charts of matrices, integration with SBW, the ability to use matrix elements in mathematical formulas, and the ability to scan optimizations and parameter estimations.
- 06 Jan 2009 17:24
Changes: Bugfixes.
- 08 May 2008 10:35
Changes: A severe problem in the SBML export, which lead to invalid SBML files due to duplicate use of the same SLD, has been fixed.
- 26 Mar 2008 09:19
Changes: Compartment volumes can now be determined by ODEs or initial assignments. Initial assignments are now allowed. There are new optimization methods: Truncated Newton and Praxis. There is a new tool that checks rate laws for possible problems. Import and export of SBML files has been improved. The mass conservation analysis task is now available on the command line version. There is a new command line option to only validate the input files. There are many bugfixes.
